rs28264999 SNP Detail

Summary

• ID
  rs28264999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162695628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTAACCA CAGTGAAGGC
  TCAAATGTGT TTGGTCACAA AAACAGACCA GCAACATGAG AGAGATAAAG GAAGGCGGAT
  GTTTATGTGG CTATTAACAA CCTGGTTAAA GAATACCACA GCCAAATTTA TCAGCCAGCC
  AGTATTGTGT TACCAAATGG AGCCAGTGAA AACAGCCAAA TGGTGTGGCG ATGTTTCCAC
  R
  TGCCAAGTGG CCAGCTGCCA GAGAAGCTTC CCGGCTCACA AGCATGCTGA GGTAAGGGTG
  GCGCTGCAGA GGAGAGGCCC TGGCATTCAG AAGCTCCTGT AAGCCCAGCA GCTCCCAGAG
  CCTGCCCCAG TGCCAAGTTC CATGGGACCT GTTGGCAAAG GATGGAAAGT GACAGACAAG
  TGGCCATACA GCGGCCTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37523724	NES08879102	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A		G	G	G		A	G	G	A		G
ss45215765	mCV23584504	ABI	CRAMUS_MOUSE	f	SNP	A	A					G	G
ss148198891	ENSMUSSNP5382518	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320602589	CHEV_2_162679444	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28264999					SNP	A	A	G	A	A	A	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37523724	NES08879102	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162695628 () rs orientation: forward

Symbol	Name	Function Class
Rr569228	regulatory region 569228	within coordinates