rs28265000 SNP Detail

Summary

• ID
  rs28265000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162695503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGC
  GCTCAACATC CAAAAATCTT AGCATCCTTA GGGACCCAGG AAGTAACAGA TACCAGGAGG
  TGGCTGTACT TAGTCATATG TGAGGTACAA ATATCACTAG GGTTAGCGGT AACCACAGTG
  AAGGCTCAAA TGTGTTTGGT CACAAAAACA GACCAGCAAC ATGAGAGAGA TAAAGGAAGG
  Y
  GGATGTTTAT GTGGCTATTA ACAACCTGGT TAAAGAATAC CACAGCCAAA TTTATCAGCC
  AGCCAGTATT GTGTTACCAA ATGGAGCCAG TGAAAACAGC CAAATGGTGT GGCGATGTTT
  CCACGTGCCA AGTGGCCAGC TGCCAGAGAA GCTTCCCGGC TCACAAGCAT GCTGAGGTAA
  GGGTGGCGCT GCAGAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37523725	NES08879101	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28265000					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37523725	NES08879101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162695503 () rs orientation: forward

Symbol	Name	Function Class
Rr569228	regulatory region 569228	within coordinates