rs28266330 SNP Detail

Summary

• ID
  rs28266330
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163485192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGTGGTCTC GCTGTTCCTT GGGAGGGTCT CCTCAGATTG
  ATCGACTACC CGTCTCGGGG GGTCTTTCAG CAAGACCTAA TCACCTGAGT TACTCATCAC
  S
  AAAACTCAGT CTTCCACAGA TACACTCTTT TCAGGAAAAA AAAAAAAAAA AAAAAAGCCA
  GGAAAGTGGC ATACTTCTGT AACCGCAGCA CTCAGGAGGC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37520856	NES08878540	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28266330					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520856	NES08878540	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163485192 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
0610039K10Rik	RIKEN cDNA 0610039K10 gene			1578 bp upstream
Cpgi12639	CpG island 12639			1279 bp proximal
Rr397465	regulatory region 397465			315 bp downstream
Rr397466	regulatory region 397466			907 bp upstream
Rr397467	regulatory region 397467			1720 bp upstream
Rr569445	regulatory region 569445			within coordinates
Rr569446	regulatory region 569446			1001 bp proximal
Rr569447	regulatory region 569447			1849 bp proximal
Serinc3	serine incorporator 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr21481	transcription start site region 21481			1968 bp upstream
Tssr27320	transcription start site region 27320			31 bp downstream
Tssr27321	transcription start site region 27321			1418 bp downstream
Tssr27322	transcription start site region 27322			1779 bp downstream
Tssr27323	transcription start site region 27323			1809 bp downstream
Tssr27324	transcription start site region 27324			1835 bp downstream
Tssr27325	transcription start site region 27325			1853 bp downstream
Tssr27326	transcription start site region 27326			1875 bp downstream