rs28266331 SNP Detail

Summary

• ID
  rs28266331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163484245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGAGTT TGAGGCCAGC
  CTGGTCTACA AAGTGAGTTC CAGGACAGCC AGGGCTACAC AGAGAAAACC TGTCTCAAAA
  AAAAAAAAAA AAGTTGCCTT GGTCATGGTG TCTCTTACAG CAGTAAAACC CTAACCAATA
  TACCTATTTA TTTCTCTGTG CCACAAATAC CTTTTAGAGG AGGCTGTACT TTATACCTCT
  R
  CATAGAAATC AGTAACTATT ATGTAATCTA CCTGTTACTA TATGCTTTAT CTTCTCTCTA
  TTTCATAAAT GAAGAACTCA GGCCAGAAAT CTAGCCTCAA AGTCTCCCTC ATCTGACTTA
  AAGAAGCAAC TCCTAGAAAA TACGGCCACA GAGCCCCATT TAAAGGGAAG TTTTAAAGGT
  AGGGTAAGTA TTTCTCATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37520857	NES08878552	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28266331					SNP	G	A	A	A	A	A	G	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520857	NES08878552	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163484245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			332 bp upstream
Rr397466	regulatory region 397466			1854 bp upstream
Rr569443	regulatory region 569443			1523 bp distal
Rr569444	regulatory region 569444			1677 bp distal
Rr569445	regulatory region 569445			within coordinates
Rr569446	regulatory region 569446			1948 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27320	transcription start site region 27320			978 bp downstream