rs28266334 SNP Detail

Summary

• ID
  rs28266334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163483328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCTTTG GATGAAGATG
  TAAAACTCTC AGCTCCTGCT GCATCTAGCC TGCCTGGACA CTGCCATGCT CCCACCTTGA
  TAGGAGACTG AACTTCTGAA CCTGTAGGGG TAGAGAATGT GACCCACAGA AACACAGCTT
  AATGACAGAT TGCTGTAATA ACAAGAGGTT TTTATTCCGA TTCGTGGGGT CGCTCAGCCT
  Y
  GCAGGGAGAG TCAACCCTGA TTGTCCAAAA TACAGCTATT TTATACTCTT TTGAAGGTGT
  TTACACAGCT ATATTATTAT TGGCTAGTAA AGCAACCGTA TAATTTATTT GTTTGTTTGT
  TTTTCTTTTT GGTTTTTTTG AGACAGGGCT TCTCTGTATA GCCCTGGCTG TCCTGGAACT
  GACTTTGTAG ACCAGGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37520860	NES08878586	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	C	T		T	T	T
ss148207644	ENSMUSSNP3368766	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T									C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28266334					SNP	C	T	T	T	T	T	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520860	NES08878586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163483328 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			1249 bp upstream
Rr569443	regulatory region 569443			606 bp distal
Rr569444	regulatory region 569444			760 bp distal
Rr569445	regulatory region 569445			161 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27320	transcription start site region 27320			1895 bp downstream