rs28266338 SNP Detail

Summary

• ID
  rs28266338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163481541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAATTCTC AGTAATCCCA
  GCACTTAGAA GGCAGAGGCA TTTAAGAAGC TTATGGAAAA GTATCACACG TTTGAAGACA
  ACTGGGACTA CATAAGAAGC CTGTCTCCCA ACACAAAACA ATTTAAGACA AAGTAAAAAT
  GCAGAGGCTT TAGAACCAAT ATAATTTCCA CCACTTTAGC AAAAATGTTT TTAACCCTAG
  Y
  TTTCTTTTTG TAGCATGGAC TCATTAAAAT ATTTCCTCCT TTAGACTTTA CTACAATAAA
  TGAGCCTACC ATACCGTGCC TGAAACAGGA AGAGCTTCTA AAATATATTC ACAGAGAACA
  TTATTTTGTG TGAAAACAAT GTAAGAAAAA TACAAACATC TCTACTTTTG GTTTACTGTT
  TGCTCCCAAA ATGATGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37520867	NES08878656	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	T	C	C	C	T	C
ss148207530	ENSMUSSNP848217	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28266338					SNP	T	T	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520867	NES08878656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163481541 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569442	regulatory region 569442			1403 bp distal
Rr569443	regulatory region 569443			913 bp proximal
Rr569444	regulatory region 569444			1006 bp proximal
Rr569445	regulatory region 569445			1948 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			279 bp upstream