rs28266339 SNP Detail

Summary

• ID
  rs28266339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163481494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCAAA CTAGGGCTTA
  GAAATTTTAA CAGAATCCGT TTAACATGGC AATTCTCAGT AATCCCAGCA CTTAGAAGGC
  AGAGGCATTT AAGAAGCTTA TGGAAAAGTA TCACACGTTT GAAGACAACT GGGACTACAT
  AAGAAGCCTG TCTCCCAACA CAAAACAATT TAAGACAAAG TAAAAATGCA GAGGCTTTAG
  R
  ACCAATATAA TTTCCACCAC TTTAGCAAAA ATGTTTTTAA CCCTAGCTTT CTTTTTGTAG
  CATGGACTCA TTAAAATATT TCCTCCTTTA GACTTTACTA CAATAAATGA GCCTACCATA
  CCGTGCCTGA AACAGGAAGA GCTTCTAAAA TATATTCACA GAGAACATTA TTTTGTGTGA
  AAACAATGTA AGAAAAATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37520868	NES08878646	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A	G	A	A	A	G	A
ss148207524	ENSMUSSNP2919022	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28266339					SNP	G	G	A	A	A	A	A	G	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520868	NES08878646	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163481494 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569442	regulatory region 569442			1356 bp distal
Rr569443	regulatory region 569443			960 bp proximal
Rr569444	regulatory region 569444			1053 bp proximal
Rr569445	regulatory region 569445			1995 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			232 bp upstream