rs28266431 SNP Detail

Summary

• ID
  rs28266431
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163437544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGGGGC TTCTGTTGCT
  CATAACCAGA TCTCAGCAGT GGAGAGTTTG GCCCTGTACC CTTGAAAAAA AACCTGCTGG
  CTACCCCAGG GGAGCTTTCT CCAACTTTGT ACAAGTCACT TCCATCTTCC GGAACCTCAC
  TTTTCACGTT TCTTCAGGAA CTAGTCATCT GTATTCATTG GGCTGGTTGT GATGGTGTGT
  K
  CGACCTGGTG AATTTACAGA GCATCCTCAG ATCTGACACG AGAGACCTCT CAGCACAGCC
  CTGCAATTCC TTCTCTGTGA GACCATTTAT AAGCCGCCTG ATCTCTCTGA TTTTTCCCTT
  CCCCTTTTCC TTTCTCTTCC CTCATTTCAA CAGGATTTCA CTGTCACAGT GTAACCCCAA
  GCTGGCCTTG TAACTCCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37520965	NES08879959	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28266431					SNP	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520965	NES08879959	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163437544 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	1154 bp downstream
Rr569427	regulatory region 569427	1268 bp distal
Rr569428	regulatory region 569428	within coordinates