rs28266434 SNP Detail

Summary

• ID
  rs28266434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163436307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACAGTGT CAAGGTGATA
  TTACCTGGCC TTCAAAATAC TTTCACCTTA ACAATCAGCA CAGTAGCTTA CATCTGCTAG
  TCCAGCATTT GGGGAGTGGA GGCAGGAGGC TTAACAGTCC AAGATCAGCC TGGGTTCCGT
  AATGAGACCA TGTCTCAAAA CCAAAACCAA ACCAAATCAT ATGGTAATAA CTACAGTTAG
  Y
  TCTTGGCAAC CACACAGAGA TGTGTGTATC TGCTTTTCCT CAGTGTTTCA GGCGACATGC
  AGAATGCATG TTATTTCATT ATCTTCTCCT TTTCCCTACT ATGATGAACT TTGGGGACCT
  CCTATGTAGT TAACATAGTG GGTCAGAAAG TGCTTAATTC AAAGTCACCA AGCCCTTGGA
  ACCCCCTGTC TCTGCCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37520968	NES08879968	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	T
ss148206241	ENSMUSSNP5155378	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28266434					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520968	NES08879968	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163436307 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	within coordinates
Rr569425	regulatory region 569425	1980 bp distal
Rr569427	regulatory region 569427	31 bp distal
Rr569428	regulatory region 569428	643 bp proximal