rs28266435 SNP Detail

Summary

• ID
  rs28266435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163436125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTACAT TAAAAAAAAA
  AAAAAAATCA AACCTACACT AACCCGATGG GTCCTAAGTC CAACCCCAGC CTTGCCACGG
  TACTCTCCGA GAAGGTGTCA GAGAAAACTC AGCCGGGAAC CATTCTACCC GCTCTGGATT
  CAGGTGCCAA GGCAAATGTG ATCTGGCTTT TTAGGCACTG CCACAACAGT GTCAAGGTGA
  Y
  ATTACCTGGC CTTCAAAATA CTTTCACCTT AACAATCAGC ACAGTAGCTT ACATCTGCTA
  GTCCAGCATT TGGGGAGTGG AGGCAGGAGG CTTAACAGTC CAAGATCAGC CTGGGTTCCG
  TAATGAGACC ATGTCTCAAA ACCAAAACCA AACCAAATCA TATGGTAATA ACTACAGTTA
  GTTCTTGGCA ACCACACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37520969	NES08879981	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	T
ss148206237	ENSMUSSNP6306137	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28266435					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520969	NES08879981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163436125 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	within coordinates
Rr569425	regulatory region 569425	1798 bp distal
Rr569426	regulatory region 569426	1874 bp distal
Rr569427	regulatory region 569427	within coordinates
Rr569428	regulatory region 569428	825 bp proximal