rs28272929 SNP Detail

Summary

• ID
  rs28272929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117730146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG AGAAATCTGG CCCCACTGGT
  Y
  CGCTATTTCC TTATCCCTAC TAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37690864	NES09203532	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T	T	T	C	T	T		C		T	C	T		C
ss147294993	ENSMUSSNP2680342	ENSEMBL	ENSEMBL_Sanger	f	SNP		C											T
ss321280643	CHEV_4_117545554	CHEVERUD	SCREENING_POP	f	SNP											T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28272929					SNP	C	C	T	T	T	T	T	C	T	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690864	NES09203532	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117730146 () rs orientation: forward

Symbol	Name	Function Class
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	65 bp downstream
Ccdc24	coiled-coil domain containing 24	338 bp upstream
Gm40233	predicted gene, 40233	1572 bp upstream
Rr598243	regulatory region 598243	1948 bp distal
Rr598244	regulatory region 598244	12 bp distal
Tssr42995	transcription start site region 42995	1632 bp upstream
Tssr42996	transcription start site region 42996	1614 bp upstream
Tssr42997	transcription start site region 42997	911 bp upstream
Tssr42998	transcription start site region 42998	389 bp upstream
Tssr42999	transcription start site region 42999	356 bp upstream
Tssr43000	transcription start site region 43000	335 bp upstream
Tssr43001	transcription start site region 43001	157 bp upstream