rs28272930 SNP Detail

Summary

• ID
  rs28272930
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117729791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCTCG CAACTCCAGA
  CTCAGGTCCA CTGCTGCCTC CCCCAGAATC CTCTTCACTT CAGGCCGCTC CGGGAGTGGA
  ACATGCTCCT CCACCAGCTC CCACAGTGCT GGGGAGTCCC CGGGCATGGC CTGCATGGGT
  CGCGGCCTCC TGATCAGATC TACAGGCCCG GAGGTCAGAG TGCTAGATTT CCTGGGAGAC
  S
  GATGGTTGCT CTGGACCAGA GCCACGCCCA CCAAGCCCTT CCGGCTGACA TCGATACCCC
  GCCCCTTTCT GCCAAAGTCC CCACACCAGA ATTGTGCTGT CTTTTGGTGG CCTACTATGA
  GCAGACCCTT CAGGGTGTGG GGTCCTTGCC TCTTCTGGGG GAAGCCTGGC TGTGGGAATC
  GGCCCTTAGC CCCTCCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690865	NES09203531	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272930					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690865	NES09203531	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117729791 () rs orientation: forward

Symbol	Name	Function Class
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	420 bp downstream
Ccdc24	coiled-coil domain containing 24	within coordinates
Gm40233	predicted gene, 40233	1927 bp upstream
Rr598243	regulatory region 598243	1593 bp distal
Rr598244	regulatory region 598244	within coordinates
Tssr42995	transcription start site region 42995	1277 bp upstream
Tssr42996	transcription start site region 42996	1259 bp upstream
Tssr42997	transcription start site region 42997	556 bp upstream
Tssr42998	transcription start site region 42998	34 bp upstream
Tssr42999	transcription start site region 42999	1 bp upstream
Tssr43000	transcription start site region 43000	2 bp downstream
Tssr43001	transcription start site region 43001	150 bp downstream