rs28272937 SNP Detail

Summary

• ID
  rs28272937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117728185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCATCC AATAGCCCCA
  TATTACAGCC TGCTTATAAC CCTCCCTTGG CTCCCCTTGT GCCAGGCTGA AATCCTAGGG
  CCCTGACCCC TCTTGGTTCC TGTAATTGGC TACTTGCTAG TTTTGTAGCA GTCCCACTAA
  CTGCCCAACA CACACACACA CACACACAGA GTCTACCAAC CTGGCACACT ACCCCTTTCT
  R
  GCAGTCCCAG CCCCTTAATT TCCACTCCTG TCTTCTTGCC CCCAATCTAT ACACTCAGGT
  GCCCTGAAGC CTCACCTCAG GTGTCTGACA ACTTGGTCAA TATTAGACAC ATTCAGTTGG
  TCCTTGATGA CAGTGAGGTC CCTGGGACAG GTGCTGACAG GTGAGGTTAC CATCACCCTC
  TCTGTGTTGT TCATTCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690872	NES09203647	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272937					SNP	G	G	A	G	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690872	NES09203647	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117728185 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc24	coiled-coil domain containing 24			Intron
				Noncoding-Transcript-Variant
Rr598243	regulatory region 598243			within coordinates
Rr598244	regulatory region 598244			1231 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9			Intron
Tssr42995	transcription start site region 42995			312 bp downstream
Tssr42996	transcription start site region 42996			336 bp downstream
Tssr42997	transcription start site region 42997			1038 bp downstream
Tssr42998	transcription start site region 42998			1560 bp downstream
Tssr42999	transcription start site region 42999			1575 bp downstream
Tssr43000	transcription start site region 43000			1608 bp downstream
Tssr43001	transcription start site region 43001			1756 bp downstream