rs28272938 SNP Detail

Summary

• ID
  rs28272938
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117727969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCATCCT CAGGCACATT GCCCTTGGGG TGCTGCCTTC
  CAGCCCCCAC TGTTCCCAGT TACTTCAGTC TTGCACCCCC ACAAGCACTA CCTTTTCTAC
  M
  CTGGCACTGG ACCTGTGGCT CATCCAATAG CCCCATATTA CAGCCTGCTT ATAACCCTCC
  CTTGGCTCCC CTTGTGCCAG GCTGAAATCC TAGGGCCCTG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690873	NES09203646	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272938					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690873	NES09203646	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117727969 () rs orientation: forward

Symbol	Name	Function Class
Ccdc24	coiled-coil domain containing 24	within coordinates
Rr598243	regulatory region 598243	within coordinates
Rr598244	regulatory region 598244	1447 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	1467 bp downstream
Tssr42995	transcription start site region 42995	528 bp downstream
Tssr42996	transcription start site region 42996	552 bp downstream
Tssr42997	transcription start site region 42997	1254 bp downstream
Tssr42998	transcription start site region 42998	1776 bp downstream
Tssr42999	transcription start site region 42999	1791 bp downstream
Tssr43000	transcription start site region 43000	1824 bp downstream
Tssr43001	transcription start site region 43001	1972 bp downstream