rs28272939 SNP Detail

Summary

• ID
  rs28272939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117727705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAAGATA GCAGCTAGGC
  ATGCTCTCAG ACTTAGGTGA AAGGATGCAG GAGACCTAGG GCTATCAAGT GGACTAGTCT
  AGGACTGCCA ATCATGGCCT GATAGGAGAA ATGGGCATAA GACAACCTTG ATATGCACAT
  ACATATAGAC ACACAAACAT GGTCCCTGCT AATCAGAGAA GCTGGGGAAG GCCAAGGGCT
  R
  TGCTCACCTG CAGGTCAGAG ATCTCGTTCT GCAACATGTG ACACTCTTCC TCCAGAAGGC
  TTCTAGACAG GAGCACAAAC AGCCAGAGCC AGTGAGGCAG GACCTACCCA GCTGAACCCA
  CTGCATGGCC CCACCCTCCA GAACCTCCAG AGCCAAGACA GCTCCTCCAT CCTCAGGCAC
  ATTGCCCTTG GGGTGCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690874	NES09203645	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272939					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690874	NES09203645	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117727705 () rs orientation: forward

Symbol	Name	Function Class
Ccdc24	coiled-coil domain containing 24	within coordinates
Gm17114	predicted gene 17114	1950 bp upstream
Rr598243	regulatory region 598243	within coordinates
Rr598244	regulatory region 598244	1711 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	1203 bp downstream
Tssr42995	transcription start site region 42995	792 bp downstream
Tssr42996	transcription start site region 42996	816 bp downstream
Tssr42997	transcription start site region 42997	1518 bp downstream