rs28272940 SNP Detail

Summary

• ID
  rs28272940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117727587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGC TATCAAGTGG ACTAGTCTAG
  R
  ACTGCCAATC ATGGCCTGAT AGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37690875	NES09203644	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A		A	A	G	A		G
ss147294984	ENSMUSSNP4400827	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321280637	CHEV_4_117542995	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28272940					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690875	NES09203644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117727587 () rs orientation: forward

Symbol	Name	Function Class
Ccdc24	coiled-coil domain containing 24	within coordinates
Gm17114	predicted gene 17114	1832 bp upstream
Rr598243	regulatory region 598243	within coordinates
Rr598244	regulatory region 598244	1829 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	1085 bp downstream
Tssr42995	transcription start site region 42995	910 bp downstream
Tssr42996	transcription start site region 42996	934 bp downstream
Tssr42997	transcription start site region 42997	1636 bp downstream