rs28272941 SNP Detail

Summary

• ID
  rs28272941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117727331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAGTAGTA TGTACAGTAT GAGGCAAAGG GAGGGGACTG
  GGTACCTCCA GGGGCTCGCC TGGGGACCTT ACCTCCCAGG GTAGGCATTT GGGTGTCCTT
  R
  GAGGGCTGGC AAGCCTGCAT CTGCTCCATT TCCAGACAGT GCTGTGGAGA GAGCTGTTTC
  AGTGGCCCTG CCTGAAGTTA GAGACCAAGA GCCTGAATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690876	NES09203643	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	A		G	A	G	G	A	A	A
ss45681639	mCV24295847	ABI	CRAMUS_MOUSE	f	SNP		G					A	G
ss147294977	ENSMUSSNP1941415	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272941					SNP	A	G	G	A	A	A	A	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690876	NES09203643	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117727331 () rs orientation: forward

Symbol	Name	Function Class
Ccdc24	coiled-coil domain containing 24	within coordinates
Cpgi14669	CpG island 14669	1937 bp distal
Gm17114	predicted gene 17114	1576 bp upstream
Rr598243	regulatory region 598243	182 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	829 bp downstream
Tssr42995	transcription start site region 42995	1166 bp downstream
Tssr42996	transcription start site region 42996	1190 bp downstream
Tssr42997	transcription start site region 42997	1892 bp downstream