rs28272942 SNP Detail

Summary

• ID
  rs28272942
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117727230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGATGGG TAGATGTGAG
  GTGGTCATGA TCTGAGCTGC ACTCTACATG GCCCACCCTG TGTCTGTCTT GGTGTACCTG
  TGCTTGGCAG CGGTACAGGA AGGCCCCAGA GAGACCTGTA GCTCCCGTTC CATGGCCGCC
  TTCTGATCCT TAATCTCTGT GGAAGGGCAC AGCTGATAGC ACCTGGTTCT TCTAGAGTAT
  K
  TACAGTAGTA TGTACAGTAT GAGGCAAAGG GAGGGGACTG GGTACCTCCA GGGGCTCGCC
  TGGGGACCTT ACCTCCCAGG GTAGGCATTT GGGTGTCCTT AGAGGGCTGG CAAGCCTGCA
  TCTGCTCCAT TTCCAGACAG TGCTGTGGAG AGAGCTGTTT CAGTGGCCCT GCCTGAAGTT
  AGAGACCAAG AGCCTGAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690877	NES09203642	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272942					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690877	NES09203642	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117727230 () rs orientation: forward

Symbol	Name	Function Class
Ccdc24	coiled-coil domain containing 24	within coordinates
Cpgi14669	CpG island 14669	1836 bp distal
Gm17114	predicted gene 17114	1475 bp upstream
Rr598242	regulatory region 598242	1984 bp distal
Rr598243	regulatory region 598243	283 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	728 bp downstream
Tssr42995	transcription start site region 42995	1267 bp downstream
Tssr42996	transcription start site region 42996	1291 bp downstream
Tssr42997	transcription start site region 42997	1993 bp downstream