rs28272946 SNP Detail

Summary

• ID
  rs28272946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117726733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACGAAAG TCAAGCTGGG
  ATGGGAACCT CTGTCCTCCA AGGCTCTGTG GAGGCTTGTG CAGAGGAGAA GGGGCCAAAG
  GCTTTGATGG TTAGAACAGG TGTCCTGCCA CTCAGTTCTA GATAGCACTG ACCTGACAAG
  GGGTGGGGCT GGGACCAGAC CAACACACAG CTGGGGGAGG GAGGGAGAAA CATGTGAGCG
  Y
  ATCTGAGAAT GAAGCAGAAA TGGAGCTGTG GCAGCTGGAG GCAACAACAG ATGGGCGAGT
  CTCAGCAGAA GCCTGTTTTG TGACCCTTCA GGTCGGTGCC TGGGATGCTG CACTGGAAAC
  TGATGTGGAA GTTGTCTCTT TGCGATAGCT GTACCGAAGT TGCCGTCCCC AGCGGCGGGT
  GCTTGTCTGT CCTTGAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690881	NES09203637	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28272946					SNP	C	C	T	C	C	C	C	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690881	NES09203637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117726733 () rs orientation: forward

Symbol	Name	Function Class
Ccdc24	coiled-coil domain containing 24	within coordinates
Cpgi14669	CpG island 14669	1339 bp distal
Gm17114	predicted gene 17114	978 bp upstream
Rr598242	regulatory region 598242	1487 bp distal
Rr598243	regulatory region 598243	780 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	231 bp downstream
Tssr42995	transcription start site region 42995	1764 bp downstream
Tssr42996	transcription start site region 42996	1788 bp downstream