rs28273057 SNP Detail

Summary

• ID
  rs28273057
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117694734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATTGCCCG AGCAAAGGTG GGGATGCAGG AAGCCCCTGA
  GTTTGCAGCA AGTAGCTGGC TTGGTGCCCC AGACAGGAGA CTTTATGCAC ACAACACTGT
  S
  CTAACATCCC TGTGGTAGTG AATAGAGACG GTGTCTCCTC CCTCCGAATT GTAAAGTACT
  GGAGACCTGT TGCCTCTAGT TACTAGTGAG GGCTTAGTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	NZW/LacJ	WSB/EiJ
ss37690992	NES09204262	PERLEGEN	MM_PANEL2	f	SNP		C		G	G
ss45657659	mCV24296827	ABI	CRAMUS_MOUSE	f	SNP		C	G
ss147294756	ENSMUSSNP2190571	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	NZW/LacJ	WSB/EiJ
rs28273057					SNP	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690992	NES09204262	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117694734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14668	CpG island 14668	782 bp distal
Gm17114	predicted gene 17114	within coordinates
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	within coordinates
Tssr42994	transcription start site region 42994	1690 bp upstream