rs28277350 SNP Detail

Summary

• ID
  rs28277350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164674742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTGGCT GTGGGGTCCT
  AGCAGGTGTC CGTCCCTACA CTGAACCAGA AGGTCACTCC AGGGGTGGGA TACCTACAGC
  CATACTCCAG CTGGACCAGA CGCACGCTCT TGGTGGAAGC AAACACATCT ACCACAGCGT
  AGAGGGGCTG AGCAGCTGGC AGCCCCCGGG CGCTAGGGCC CATGTCCTCC CCGTTGATGA
  Y
  GATGTGCATG TCGGCGGTCC CATCCTCACG GGGGCAGAAG AGAACACCCA AGCGGCTTCG
  GCGCGCTGTA GGAGGCAGCA CGTTTTGTTC ATAGAGCTGA TCTAAGAGGT GGCTATAAAG
  CCCTGGCCGG CTGCGGCCCA CCAGACGGTC CCGGGGAATT CGGAACTGCT CGATGCGCAG
  ATAGGGTTCA ACCAGTAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37516092	NES08883264	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28277350					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516092	NES08883264	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164674742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	within coordinates
Ctsa	cathepsin A	51 bp upstream
Neurl2	neuralized E3 ubiquitin protein ligase 2	within coordinates
Rr367364	regulatory region 367364	940 bp upstream
Rr397479	regulatory region 397479	1319 bp downstream
Rr569727	regulatory region 569727	1433 bp distal
Rr569728	regulatory region 569728	573 bp distal
Rr569729	regulatory region 569729	within coordinates
Rr569730	regulatory region 569730	624 bp proximal
Tssr21656	transcription start site region 21656	40 bp upstream
Tssr21657	transcription start site region 21657	59 bp upstream
Tssr21658	transcription start site region 21658	137 bp upstream
Tssr21659	transcription start site region 21659	944 bp upstream
Tssr21660	transcription start site region 21660	959 bp upstream
Tssr21661	transcription start site region 21661	1019 bp upstream
Tssr21662	transcription start site region 21662	1193 bp upstream
Tssr21663	transcription start site region 21663	1254 bp upstream
Tssr21664	transcription start site region 21664	1285 bp upstream
Tssr27546	transcription start site region 27546	616 bp downstream