rs28277351 SNP Detail

Summary

• ID
  rs28277351
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164674517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGTGCTG GGATCAAAGG
  CGTGTGCCAC CACACCCGGC AATAAATATT TTTTTAAAAG CCCACATCCA CATCGTCCAA
  ACCAAAAGGA ACCTGCAGGG TGTCTCAGTC AACTAGGGGA GATGAATATA CCAGGCGGGC
  CCACAGCCAA GGTGTGATGT GCGTAAAATC ACAAGCTGGT GCCCAAGGCA GACCGTGCAT
  Y
  TTCAAAACTA GTTGCAAGGC CTTATTAGCT GGCTGTGGGG TCCTAGCAGG TGTCCGTCCC
  TACACTGAAC CAGAAGGTCA CTCCAGGGGT GGGATACCTA CAGCCATACT CCAGCTGGAC
  CAGACGCACG CTCTTGGTGG AAGCAAACAC ATCTACCACA GCGTAGAGGG GCTGAGCAGC
  TGGCAGCCCC CGGGCGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37516093	NES08883263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28277351					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516093	NES08883263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164674517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	115 bp proximal
Ctsa	cathepsin A	276 bp upstream
Neurl2	neuralized E3 ubiquitin protein ligase 2	within coordinates
Rr367364	regulatory region 367364	1165 bp upstream
Rr397479	regulatory region 397479	1094 bp downstream
Tssr21656	transcription start site region 21656	265 bp upstream
Tssr21657	transcription start site region 21657	284 bp upstream
Tssr21658	transcription start site region 21658	362 bp upstream
Tssr21659	transcription start site region 21659	1169 bp upstream
Tssr21660	transcription start site region 21660	1184 bp upstream
Tssr21661	transcription start site region 21661	1244 bp upstream
Tssr21662	transcription start site region 21662	1418 bp upstream
Tssr21663	transcription start site region 21663	1479 bp upstream
Tssr21664	transcription start site region 21664	1510 bp upstream
Tssr27546	transcription start site region 27546	841 bp downstream