rs28277352 SNP Detail

Summary

• ID
  rs28277352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164673217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGGCTG AGTCTGCCTG
  GCGGGGCTGC TTGTATAGCT GACATAACAC CTCTTTCTGA GGACTTTGAT CAGACCTGTT
  GCCATTATAA CACAGCCTAA CTGACCCTCC TCCCTTCACT CAGCAGCTTT CTGTCTGCTT
  TGCCTATGCA ACCACAGCAC AGTAAAATAG CAGGTTCCAG CTCAACGAAT TCATGACGCA
  Y
  GACCAGAGGT GTAAGTGAAA GGTTCGCTGA GCGACAATGA GCTAGACCTC TTTTTTTTTT
  CTCAAGACAG GGTTTCTCTG TATAGCCCTG GCTGTCCTGG AAGTCACTCT GTAGACCAGG
  CTGGCCTCGA ACTCAGAAAT GCCTCTAACT CCCAAGTGCT GGGATTAAAG GTGTGTGCCA
  CCACTGCCTG GCTAGACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37516094	NES08883313	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28277352					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516094	NES08883313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164673217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1415 bp proximal
Ctsa	cathepsin A	1576 bp upstream
Neurl2	neuralized E3 ubiquitin protein ligase 2	Intron
Rr397479	regulatory region 397479	within coordinates
Rr569727	regulatory region 569727	within coordinates
Rr569728	regulatory region 569728	931 bp proximal
Rr569729	regulatory region 569729	1152 bp proximal
Tssr21656	transcription start site region 21656	1565 bp upstream
Tssr21657	transcription start site region 21657	1584 bp upstream
Tssr21658	transcription start site region 21658	1662 bp upstream