rs28277353 SNP Detail

Summary

• ID
  rs28277353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164672834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGACCC TCCAATGCTC
  AGAACATCCA CATCGGCTCT ATTTATTTCC AGCCCTGATT GTGAGCTGTG CGACCAGCTT
  CAGACTAGCC ACTTCTCTAG AGGCAGGGCG CACCACCGGG GACTTTGCTC TGGTGGCCAC
  AGACAGGCGT TCATTCGTTC ATTCGTACTT GCAGAAGTCC TTCAGTCCTT TGGGCAGGTG
  R
  AGCACATCAA TGGCCAGCCT GTGTACCACC CTCTTCTGGA TCACTAGTCG GCACAGAGTC
  TGCAGAGATG GCACTGTGGA GAGATGACTG TCAAAAGCAA ACTGGTAGGG GTGGGGGTGG
  GGGGCTAACA CTAGCGCTGG GGTCTGCGTC CTGGCTCCAT CAACTTGGGA ATCACCTTCC
  GCTCTCAGGC TGAGTCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37516095	NES08883312	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28277353					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516095	NES08883312	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164672834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1798 bp proximal
Ctsa	cathepsin A	1959 bp upstream
Neurl2	neuralized E3 ubiquitin protein ligase 2	Coding-Synonymous
Rr397479	regulatory region 397479	288 bp upstream
Rr569727	regulatory region 569727	151 bp proximal
Rr569728	regulatory region 569728	1314 bp proximal
Rr569729	regulatory region 569729	1535 bp proximal
Tssr21656	transcription start site region 21656	1948 bp upstream
Tssr21657	transcription start site region 21657	1967 bp upstream