rs28277354 SNP Detail

Summary

• ID
  rs28277354
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164672717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAAGTGT CCAGATAATT
  AAAGAGTATG CACGCTAGGG AGCCCTGCTA GGCAGGTTCT AAAATACTTG CTCTGACCTG
  GTATCTCTAC AAGTGGCTCT CACAGGGCTG CAGAGGCAAG GAGACCCTCC AATGCTCAGA
  ACATCCACAT CGGCTCTATT TATTTCCAGC CCTGATTGTG AGCTGTGCGA CCAGCTTCAG
  W
  CTAGCCACTT CTCTAGAGGC AGGGCGCACC ACCGGGGACT TTGCTCTGGT GGCCACAGAC
  AGGCGTTCAT TCGTTCATTC GTACTTGCAG AAGTCCTTCA GTCCTTTGGG CAGGTGGAGC
  ACATCAATGG CCAGCCTGTG TACCACCCTC TTCTGGATCA CTAGTCGGCA CAGAGTCTGC
  AGAGATGGCA CTGTGGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37516096	NES08883311	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A		A	A	A	A	A	A
ss45340444	mCV23739708	ABI	CRAMUS_MOUSE	f	SNP		T						A		A
ss148232096	ENSMUSSNP1105390	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28277354					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516096	NES08883311	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164672717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1915 bp proximal
Neurl2	neuralized E3 ubiquitin protein ligase 2	mRNA-UTR
Rr397479	regulatory region 397479	405 bp upstream
Rr569727	regulatory region 569727	268 bp proximal
Rr569728	regulatory region 569728	1431 bp proximal
Rr569729	regulatory region 569729	1652 bp proximal