rs28277355 SNP Detail

Summary

• ID
  rs28277355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164672710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCATTCAT CAAGTGTCCA
  GATAATTAAA GAGTATGCAC GCTAGGGAGC CCTGCTAGGC AGGTTCTAAA ATACTTGCTC
  TGACCTGGTA TCTCTACAAG TGGCTCTCAC AGGGCTGCAG AGGCAAGGAG ACCCTCCAAT
  GCTCAGAACA TCCACATCGG CTCTATTTAT TTCCAGCCCT GATTGTGAGC TGTGCGACCA
  R
  CTTCAGACTA GCCACTTCTC TAGAGGCAGG GCGCACCACC GGGGACTTTG CTCTGGTGGC
  CACAGACAGG CGTTCATTCG TTCATTCGTA CTTGCAGAAG TCCTTCAGTC CTTTGGGCAG
  GTGGAGCACA TCAATGGCCA GCCTGTGTAC CACCCTCTTC TGGATCACTA GTCGGCACAG
  AGTCTGCAGA GATGGCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37516097	NES08883310	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28277355					SNP	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516097	NES08883310	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164672710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1922 bp proximal
Neurl2	neuralized E3 ubiquitin protein ligase 2	mRNA-UTR
Rr397479	regulatory region 397479	412 bp upstream
Rr569727	regulatory region 569727	275 bp proximal
Rr569728	regulatory region 569728	1438 bp proximal
Rr569729	regulatory region 569729	1659 bp proximal