rs28277371 SNP Detail

Summary

• ID
  rs28277371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164666248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCTGCC TCCACCTCCC
  AGGTGCTGGG ATTACAGGTG TTGGTGCCAC ACCCAATTCC CTAGTTCTTT TGTTTGGTTG
  GTTCGGGATT TTTGCATGCA TGAGTGTGTG GTGGTTGTTA GGGGTTTTGT TTTTGTTTTT
  TGTTTTTTTA AGACAGGTTC TCTCTAAATT GCCTGTGCTG GTCTTGAGCT GATCCAGTGA
  Y
  GCCTGGTGAC GCTTCTGTCT CAGCATTTTA GGTAGCTTAG ATCACAAAGG TACACCACTG
  CATGTGACTT CCTGCCCTTT TTAGTTCCTG GGCTGGCTTG TTATTTATCC CTCATATCCG
  GGGAAATCTC CCTCAGTGTC CCACTGTAGC CCATGTGCCT TGCCCTCCGC AGCATGCTCT
  CTGGCCTCTT TCTCATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516113	NES08883427	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277371					SNP	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516113	NES08883427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164666248 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12673	CpG island 12673			1034 bp distal
Rr374206	regulatory region 374206			within coordinates
Rr569723	regulatory region 569723			1632 bp distal
Rr569724	regulatory region 569724			630 bp distal
Rr569725	regulatory region 569725			1506 bp distal
Rr569726	regulatory region 569726			1130 bp distal
Tssr21653	transcription start site region 21653			1353 bp downstream
Tssr21654	transcription start site region 21654			1288 bp downstream
Tssr21655	transcription start site region 21655			1256 bp downstream
Zswim1	zinc finger SWIM-type containing 1			Intron
				mRNA-UTR