rs28277372 SNP Detail

Summary

• ID
  rs28277372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164666219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGGTTGG TTCGGGATTT TTGCATGCAT GAGTGTGTGG
  TGGTTGTTAG GGGTTTTGTT TTTGTTTTTT GTTTTTTTAA GACAGGTTCT CTCTAAATTG
  S
  CTGTGCTGGT CTTGAGCTGA TCCAGTGACG CCTGGTGACG CTTCTGTCTC AGCATTTTAG
  GTAGCTTAGA TCACAAAGGT ACACCACTGC ATGTGACTTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37516114	NES08883426	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28277372					SNP	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516114	NES08883426	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164666219 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12673	CpG island 12673			1005 bp distal
Rr374206	regulatory region 374206			within coordinates
Rr569723	regulatory region 569723			1603 bp distal
Rr569724	regulatory region 569724			601 bp distal
Rr569725	regulatory region 569725			1477 bp distal
Rr569726	regulatory region 569726			1101 bp distal
Tssr21653	transcription start site region 21653			1324 bp downstream
Tssr21654	transcription start site region 21654			1259 bp downstream
Tssr21655	transcription start site region 21655			1227 bp downstream
Zswim1	zinc finger SWIM-type containing 1			Intron
				mRNA-UTR