rs28277373 SNP Detail

Summary

• ID
  rs28277373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164665705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGCCAG GGCTATACAG
  AGAAACCGTC TCGAAAAAAG CCAAAAGAAA AAAATAAATA AAGTGAAAGG AATCAAGTTT
  CAGAGAAGGC AATTGGCTTG CTCAATATTT CACAGCAAAT TTTGAGCAGT TTTTTTTTCC
  TGGTATATAC CAGGACCAAA GAAAAAGTTG GTAAGAATTA TAAGAATTTG TGAACAGAAA
  R
  GCCATGCAAA TATTTAGAAT GATTTTTAAA AAAGAATTAA ATGTTGACAC ATGCCTTATT
  TGCAGCACTT GGAAGCTGAG GTGAGAGGAT TGCTGTGGAC AAGTCAGAGC TACACAGCAG
  AATCCTTCTG TAGAAAAAGA AGGTCCACAT GCCATATGGG TTTTTTTGTT TTGTTTTTTG
  AGACAGAGGG GTACTCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516115	NES08883448	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277373					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516115	NES08883448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164665705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12673	CpG island 12673	491 bp distal
Rr374206	regulatory region 374206	within coordinates
Rr569723	regulatory region 569723	1089 bp distal
Rr569724	regulatory region 569724	87 bp distal
Rr569725	regulatory region 569725	963 bp distal
Rr569726	regulatory region 569726	587 bp distal
Tssr21653	transcription start site region 21653	810 bp downstream
Tssr21654	transcription start site region 21654	745 bp downstream
Tssr21655	transcription start site region 21655	713 bp downstream
Zswim1	zinc finger SWIM-type containing 1	Intron
Zswim3	zinc finger SWIM-type containing 3	1658 bp downstream