rs28277374 SNP Detail

Summary

• ID
  rs28277374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164665020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGAGCT GCCAGTCCAG
  GATTGGTCCG TAACTCCCAA GTTCCACAGC GAGCTCCTTT GGTCTGAGTC ATTGTGAAGC
  TGGCGTGGTG ATTGGCGAGG CTGGACGTCA GTCAGTCGGA GGCGGGCCCA GTGGGAGGAA
  TGGCTGCCGC GTCTGCCGGT GCGCGAATGG TCTCGGCCGT GGAGGCGTGA AGCCGGGTCT
  Y
  AGCGACTAGT GCATTCAGCT TCCACCAGTG GAAGGTGGAT TTCGGCTCCG CTGGGCTTGA
  ACACGAACCT CAGCCTTCCG CGTCCCCCAC CGGTGTTCAG GTGAGGTCAG AGGCCGCCTT
  CCCTTCCTGA TCCATAATTT GGGACTCTAT AGGATGCCAT CAGGATCTGG AGCCAAAGCT
  CGGCTTCCAG CTGTTGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516116	NES08883459	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277374					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516116	NES08883459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164665020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12673	CpG island 12673	within coordinates
Gm75078	predicted gene, 75078	1993 bp upstream
Rr374206	regulatory region 374206	within coordinates
Rr569723	regulatory region 569723	404 bp distal
Rr569724	regulatory region 569724	within coordinates
Rr569725	regulatory region 569725	278 bp distal
Rr569726	regulatory region 569726	77 bp proximal
Tssr21653	transcription start site region 21653	125 bp downstream
Tssr21654	transcription start site region 21654	60 bp downstream
Tssr21655	transcription start site region 21655	28 bp downstream
Tssr27543	transcription start site region 27543	1991 bp upstream
Zswim1	zinc finger SWIM-type containing 1	mRNA-UTR
Zswim3	zinc finger SWIM-type containing 3	973 bp downstream