rs28277376 SNP Detail

Summary

• ID
  rs28277376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164662860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCTGCA TGCATGTAAC
  ACCTACATGG ACAGCCTAGA CATAGTCACC AGCAAGGTGT CAAGCCTCTT TCGGGAACAG
  CGGTCTCTGC TGGACTGCAT CCTTCACTTT GTGGATTACA TAGACTTCTT TAATACCAAA
  GGTCTGAAGA GCTTGCCCAC AAATGCTCCC AAGTTAAGGA GAACTCGGCT CCCAAGCACG
  Y
  CTCCAAGGCC CAAGAAGCCT TTTAGAATTT GTGGTGGGGG TGACACCAGG CTCCCTGTGG
  AAGAGGTAGA AGAGACAAAG GCAGACTCAG CACAGTCTCA GTTGCCACAG CCCCAGGATC
  AGTCCTCCAA GGCTGGCATG CTAGACATCT TGCACCAGAG TGGCTCTGAA CTAGCCTACA
  AGTTGTGTCA TAATGAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516118	NES08883506	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277376					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516118	NES08883506	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164662860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12673	CpG island 12673	1840 bp proximal
Gm75078	predicted gene, 75078	within coordinates
Rr374206	regulatory region 374206	1229 bp upstream
Rr569723	regulatory region 569723	1328 bp proximal
Rr569724	regulatory region 569724	1757 bp proximal
Rr569725	regulatory region 569725	1861 bp proximal
Tssr27543	transcription start site region 27543	155 bp downstream
Zswim3	zinc finger SWIM-type containing 3	Coding-NonSynonymous