rs28277437 SNP Detail

Summary

• ID
  rs28277437
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164620340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA GGTTATACCC ACAGTTTCTT
  M
  AGAGAGTAGT CGGGGAACCC CCACC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	NZW/LacJ	SM/J
ss37516179	NES08878239	PERLEGEN	MM_PANEL2	f	SNP	C						A
ss45211349	mCV24935968	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	A
ss148231967	ENSMUSSNP2701297	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		A
ss320606916	CHEV_2_164603920	CHEVERUD	SCREENING_POP	f	SNP						C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	NZW/LacJ	SM/J
rs28277437					SNP	C	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516179	NES08878239	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164620340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12669	CpG island 12669	1024 bp distal
Tnnc2	troponin C2, fast	within coordinates
Tssr760	transcription start site region 760	571 bp upstream
Tssr21644	transcription start site region 21644	910 bp downstream
Tssr21645	transcription start site region 21645	886 bp downstream
Tssr21646	transcription start site region 21646	837 bp downstream
Tssr21647	transcription start site region 21647	639 bp downstream
Tssr21648	transcription start site region 21648	455 bp downstream
Tssr27530	transcription start site region 27530	601 bp upstream
Tssr27531	transcription start site region 27531	436 bp upstream
Tssr27532	transcription start site region 27532	405 bp upstream
Tssr27533	transcription start site region 27533	367 bp upstream
Tssr27534	transcription start site region 27534	333 bp upstream
Tssr27535	transcription start site region 27535	192 bp upstream
Tssr27536	transcription start site region 27536	1301 bp downstream