rs28277438 SNP Detail

Summary

• ID
  rs28277438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164619617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTATCA CCATCCTTCA
  TCAGGGATTC GATCTCCTCT TCTGTCACAT GCTCCCCAGA AGCCCGGAAA ATCTCAGCTA
  GCTCCTCAGC ATCAATGTAG CCGTCTGCGT TCCTTTGGGA GGGAAGGACA GAGAAGGACA
  CAGGGTCAAC CTCACCCTGG CCAGCCTGCT TCTTCACTTC AGGCCCACGG GCTCCATCTG
  Y
  TCTCAGGTCC AGGATCCCGG AAGCCCCACG CACCTGTCAA AGATGCGGAA GCACTCAGCC
  AGTTCCTCTT CGCTCTTCCC CTTCGCATCC TCTTTCATCT GGCGCACCAT CATGACCAAG
  AACTCTTCAA AGTCGATAGT ACCGCTGCCT GCAAGGATCG GGGTTGGCAG ATGTGGGGCC
  TGCTTAGCCC AAGGTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ
ss37516180	NES08878236	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ
rs28277438					SNP	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516180	NES08878236	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164619617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12669	CpG island 12669	301 bp distal
Tnnc2	troponin C2, fast	Intron
Tssr760	transcription start site region 760	124 bp downstream
Tssr21644	transcription start site region 21644	187 bp downstream
Tssr21645	transcription start site region 21645	163 bp downstream
Tssr21646	transcription start site region 21646	114 bp downstream
Tssr21647	transcription start site region 21647	45 bp upstream
Tssr21648	transcription start site region 21648	245 bp upstream
Tssr27530	transcription start site region 27530	110 bp downstream
Tssr27531	transcription start site region 27531	276 bp downstream
Tssr27532	transcription start site region 27532	294 bp downstream
Tssr27533	transcription start site region 27533	338 bp downstream
Tssr27534	transcription start site region 27534	379 bp downstream
Tssr27535	transcription start site region 27535	509 bp downstream