rs28277439 SNP Detail

Summary

• ID
  rs28277439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164619606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCGTCGT TGTTTTTATC
  ACCATCCTTC ATCAGGGATT CGATCTCCTC TTCTGTCACA TGCTCCCCAG AAGCCCGGAA
  AATCTCAGCT AGCTCCTCAG CATCAATGTA GCCGTCTGCG TTCCTTTGGG AGGGAAGGAC
  AGAGAAGGAC ACAGGGTCAA CCTCACCCTG GCCAGCCTGC TTCTTCACTT CAGGCCCACG
  R
  GCTCCATCTG CTCTCAGGTC CAGGATCCCG GAAGCCCCAC GCACCTGTCA AAGATGCGGA
  AGCACTCAGC CAGTTCCTCT TCGCTCTTCC CCTTCGCATC CTCTTTCATC TGGCGCACCA
  TCATGACCAA GAACTCTTCA AAGTCGATAG TACCGCTGCC TGCAAGGATC GGGGTTGGCA
  GATGTGGGGC CTGCTTAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	NZW/LacJ
ss37516181	NES08878235	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	NZW/LacJ
rs28277439					SNP	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516181	NES08878235	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164619606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12669	CpG island 12669	290 bp distal
Tnnc2	troponin C2, fast	within coordinates
Tssr760	transcription start site region 760	135 bp downstream
Tssr21644	transcription start site region 21644	176 bp downstream
Tssr21645	transcription start site region 21645	152 bp downstream
Tssr21646	transcription start site region 21646	103 bp downstream
Tssr21647	transcription start site region 21647	56 bp upstream
Tssr21648	transcription start site region 21648	256 bp upstream
Tssr27530	transcription start site region 27530	121 bp downstream
Tssr27531	transcription start site region 27531	287 bp downstream
Tssr27532	transcription start site region 27532	305 bp downstream
Tssr27533	transcription start site region 27533	349 bp downstream
Tssr27534	transcription start site region 27534	390 bp downstream
Tssr27535	transcription start site region 27535	520 bp downstream