rs28278209 SNP Detail

Summary

• ID
  rs28278209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87688843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAACCAC ATAAGCATAC
  AAAAAAAAAA TCCTCCATCC ATCAACTGAA GATGGAGTCA CAGGGCTGCT AAGGACCCTC
  TATTATTGAT CCAGCTTTCT CTGTCTTCTC CCTCCTGTGG ACTGTGGAAA AAGAGAGAGC
  CAAGTCTATG TCCACAAGGG ACAGAGAACT AAAAGTGACA GAGAGGAATA TGGCATCCTC
  R
  CCTTTTAGAA CCATCCTGTC CAATCTGGAG CTAGTAGCCA CATGTGGTTA TTTCAATTTA
  AATTCTTTGT AGCAGGGAGT ACTGGCTCAC ACCTTTAATC CCAGTCTTTG GGAGGTAGAG
  GCATGAGGCT CTTAGTGAGA ATTCAAGGCC AGCCTGGTCT ACAGAGTGAG TTCTAGGACA
  GCCAGGGCTA TAGAGTGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37228045	NES08587606	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28278209					SNP	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228045	NES08587606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87688843 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	1845 bp distal
Rr453905	regulatory region 453905	1791 bp distal
Tssr3633	transcription start site region 3633	1678 bp downstream
Tssr3634	transcription start site region 3634	1889 bp downstream
Tssr103995	transcription start site region 103995	1974 bp downstream
Tssr103996	transcription start site region 103996	1924 bp downstream
Tssr103997	transcription start site region 103997	1754 bp downstream
Tssr103998	transcription start site region 103998	1609 bp downstream
Tssr103999	transcription start site region 103999	686 bp downstream
Tssr104000	transcription start site region 104000	572 bp downstream
Tssr104001	transcription start site region 104001	546 bp downstream
Tssr104002	transcription start site region 104002	524 bp downstream
Tssr104003	transcription start site region 104003	449 bp downstream
Tssr104004	transcription start site region 104004	427 bp downstream
Tssr104005	transcription start site region 104005	400 bp downstream
Tssr104006	transcription start site region 104006	1872 bp upstream
Tssr104007	transcription start site region 104007	1955 bp upstream
Tssr109976	transcription start site region 109976	1583 bp upstream
Tssr109977	transcription start site region 109977	647 bp upstream
Tssr109978	transcription start site region 109978	637 bp upstream
Tssr109979	transcription start site region 109979	570 bp upstream
Tssr109980	transcription start site region 109980	395 bp upstream