rs28278210 SNP Detail

Summary

• ID
  rs28278210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87688443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAACCAGA TCAACGCGCT
  CACTTCCTTC GTGGACGCCA GCGGGGTGTA CGGCAGCGAG GACCCCCTAG CCAGAAAGCT
  GCGCAACCTC ACCAACCAGC TGGGGCTGCT GGCTATCAAT ACACGCTTCC AAGACAATGG
  CAGGGCCCTG ATGCCCTTTG ACAGCCTGCA CGATGACCCC TGCCTCCTCA CCAACCGCTC
  Y
  GCCCGCATTC CTTGTTTTCT GGCAGGTCAG CCCGGGGACT GAACTAGAGT GGCATAGAGC
  TGTTTCCAGC TTGTGAGAAC ACAGCCTGTA TGTGAGCAAC ATGCGGGCTT GTGATAAGAG
  ATGCTGGTCT CAACAACTTA TTAGTCTAGT TGCCTTGGTA ACGAGTTGGA TGGAGACAGA
  AAGGAAAATA ACAGCAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37228046	NES08587605	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	NZW/LacJ	PWD/PhJ
rs28278210					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228046	NES08587605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87688443 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	1445 bp distal
Rr453905	regulatory region 453905	1391 bp distal
Tssr3633	transcription start site region 3633	1278 bp downstream
Tssr103993	transcription start site region 103993	1825 bp downstream
Tssr103994	transcription start site region 103994	1743 bp downstream
Tssr103995	transcription start site region 103995	1574 bp downstream
Tssr103996	transcription start site region 103996	1524 bp downstream
Tssr103997	transcription start site region 103997	1354 bp downstream
Tssr103998	transcription start site region 103998	1209 bp downstream
Tssr103999	transcription start site region 103999	286 bp downstream
Tssr104000	transcription start site region 104000	172 bp downstream
Tssr104001	transcription start site region 104001	146 bp downstream
Tssr104002	transcription start site region 104002	124 bp downstream
Tssr104003	transcription start site region 104003	49 bp downstream
Tssr104004	transcription start site region 104004	27 bp downstream
Tssr104005	transcription start site region 104005	within coordinates
Tssr109976	transcription start site region 109976	1183 bp upstream
Tssr109977	transcription start site region 109977	247 bp upstream
Tssr109978	transcription start site region 109978	237 bp upstream
Tssr109979	transcription start site region 109979	170 bp upstream
Tssr109980	transcription start site region 109980	within coordinates