rs28278211 SNP Detail

Summary

• ID
  rs28278211
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87688368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG CTGCTGGCTA TCAATACACG
  M
  TTCCAAGACA ATGGCAGGGC CCTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss37228047	NES08587603	PERLEGEN	MM_PANEL2	f	SNP						A		C
ss38845112	mCV22737742	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss132513015	ENSMUSSNP6249754	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss323773684	CHEV_11_87611044	CHEVERUD	SCREENING_POP	f	SNP							C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs28278211					SNP	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228047	NES08587603	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87688368 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	1370 bp distal
Rr453905	regulatory region 453905	1316 bp distal
Tssr3633	transcription start site region 3633	1203 bp downstream
Tssr103993	transcription start site region 103993	1750 bp downstream
Tssr103994	transcription start site region 103994	1668 bp downstream
Tssr103995	transcription start site region 103995	1499 bp downstream
Tssr103996	transcription start site region 103996	1449 bp downstream
Tssr103997	transcription start site region 103997	1279 bp downstream
Tssr103998	transcription start site region 103998	1134 bp downstream
Tssr103999	transcription start site region 103999	211 bp downstream
Tssr104000	transcription start site region 104000	97 bp downstream
Tssr104001	transcription start site region 104001	71 bp downstream
Tssr104002	transcription start site region 104002	49 bp downstream
Tssr104003	transcription start site region 104003	15 bp upstream
Tssr104004	transcription start site region 104004	41 bp upstream
Tssr104005	transcription start site region 104005	65 bp upstream
Tssr109976	transcription start site region 109976	1108 bp upstream
Tssr109977	transcription start site region 109977	172 bp upstream
Tssr109978	transcription start site region 109978	162 bp upstream
Tssr109979	transcription start site region 109979	95 bp upstream
Tssr109980	transcription start site region 109980	71 bp downstream