rs28278213 SNP Detail

Summary

• ID
  rs28278213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87687461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCTGAGCA AGACTGGTCC TCGCTCCTGG GCCCAGAGTC
  AATACTTGGC TCCCTCAGCA GAGCCAGCTG TCAACTCAAG GAACCTGATA TGCACCCTGA
  Y
  ATGCACCCTG AACTTAGCAT CGCTCTGTGT GGTGGGGTGA CTGGTTCTTT GTGAGGCTGG
  GAGAATTCTG GGATGAGGAT CTGACTTGTC TTCTTCATAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37228049	NES08587646	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28278213					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228049	NES08587646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87687461 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	463 bp distal
Rr453905	regulatory region 453905	409 bp distal
Tssr3631	transcription start site region 3631	1867 bp downstream
Tssr3632	transcription start site region 3632	1367 bp downstream
Tssr3633	transcription start site region 3633	296 bp downstream
Tssr103989	transcription start site region 103989	1820 bp downstream
Tssr103990	transcription start site region 103990	1408 bp downstream
Tssr103991	transcription start site region 103991	1335 bp downstream
Tssr103992	transcription start site region 103992	1317 bp downstream
Tssr103993	transcription start site region 103993	843 bp downstream
Tssr103994	transcription start site region 103994	761 bp downstream
Tssr103995	transcription start site region 103995	592 bp downstream
Tssr103996	transcription start site region 103996	542 bp downstream
Tssr103997	transcription start site region 103997	372 bp downstream
Tssr103998	transcription start site region 103998	227 bp downstream
Tssr103999	transcription start site region 103999	681 bp upstream
Tssr104000	transcription start site region 104000	793 bp upstream
Tssr104001	transcription start site region 104001	823 bp upstream
Tssr104002	transcription start site region 104002	849 bp upstream
Tssr104003	transcription start site region 104003	922 bp upstream
Tssr104004	transcription start site region 104004	948 bp upstream
Tssr104005	transcription start site region 104005	972 bp upstream
Tssr109976	transcription start site region 109976	201 bp upstream
Tssr109977	transcription start site region 109977	710 bp downstream
Tssr109978	transcription start site region 109978	738 bp downstream
Tssr109979	transcription start site region 109979	790 bp downstream
Tssr109980	transcription start site region 109980	978 bp downstream