rs28278214 SNP Detail

Summary

• ID
  rs28278214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87687328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG AAGATGGTTT ACATTAGTGA
  Y
  GGCGCCCCTT CTGAGTCCTA GGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37228050	NES08587645	PERLEGEN	MM_PANEL2	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs28278214					SNP	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228050	NES08587645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87687328 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	1955 bp downstream
Rr453904	regulatory region 453904	330 bp distal
Rr453905	regulatory region 453905	276 bp distal
Tssr3631	transcription start site region 3631	1734 bp downstream
Tssr3632	transcription start site region 3632	1234 bp downstream
Tssr3633	transcription start site region 3633	163 bp downstream
Tssr103988	transcription start site region 103988	1966 bp downstream
Tssr103989	transcription start site region 103989	1687 bp downstream
Tssr103990	transcription start site region 103990	1275 bp downstream
Tssr103991	transcription start site region 103991	1202 bp downstream
Tssr103992	transcription start site region 103992	1184 bp downstream
Tssr103993	transcription start site region 103993	710 bp downstream
Tssr103994	transcription start site region 103994	628 bp downstream
Tssr103995	transcription start site region 103995	459 bp downstream
Tssr103996	transcription start site region 103996	409 bp downstream
Tssr103997	transcription start site region 103997	239 bp downstream
Tssr103998	transcription start site region 103998	94 bp downstream
Tssr103999	transcription start site region 103999	814 bp upstream
Tssr104000	transcription start site region 104000	926 bp upstream
Tssr104001	transcription start site region 104001	956 bp upstream
Tssr104002	transcription start site region 104002	982 bp upstream
Tssr104003	transcription start site region 104003	1055 bp upstream
Tssr104004	transcription start site region 104004	1081 bp upstream
Tssr104005	transcription start site region 104005	1105 bp upstream
Tssr109976	transcription start site region 109976	68 bp upstream
Tssr109977	transcription start site region 109977	843 bp downstream
Tssr109978	transcription start site region 109978	871 bp downstream
Tssr109979	transcription start site region 109979	923 bp downstream
Tssr109980	transcription start site region 109980	1111 bp downstream