rs28278216 SNP Detail

Summary

• ID
  rs28278216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87687112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTCCATG CCCTTTGGCT
  GGACGCCTGG AGTCAATCGC AATGGCTTCA AGGTGCCCCT GGTGAGTGTC CAGTAGAGGG
  AGGTGAGCCC AGCTAAGCTT ATGTGCAGGA CCTAGGCATC CAATGACTCC TGTTGTTGCT
  GCAGGCTCGC CAGGTCTCCA ATGCCATCGT GCGCTTCCCC AACGATCAGC TGACCAAGGA
  Y
  CAGGAGCGTG CACTCATGTT CATGCAGTGG GGACAGTTTC TGGATCATGA TATCACCTTG
  ACTCCAGAGC CAGCTACCCG GTTCTCCTTC TTCACTGGCC TCAACTGCGA GACCAGCTGC
  CTGCAGCAGC CACCCTGCTT CCCCCTCAAG GTGCTGCCTC CTTCCATCCA TCAGGGTCTG
  TGTCTGAAGA GAGGGAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37228052	NES08587643	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28278216					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228052	NES08587643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87687112 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	1739 bp downstream
Rr453904	regulatory region 453904	114 bp distal
Rr453905	regulatory region 453905	60 bp distal
Tssr3631	transcription start site region 3631	1518 bp downstream
Tssr3632	transcription start site region 3632	1018 bp downstream
Tssr3633	transcription start site region 3633	27 bp upstream
Tssr103988	transcription start site region 103988	1750 bp downstream
Tssr103989	transcription start site region 103989	1471 bp downstream
Tssr103990	transcription start site region 103990	1059 bp downstream
Tssr103991	transcription start site region 103991	986 bp downstream
Tssr103992	transcription start site region 103992	968 bp downstream
Tssr103993	transcription start site region 103993	494 bp downstream
Tssr103994	transcription start site region 103994	412 bp downstream
Tssr103995	transcription start site region 103995	243 bp downstream
Tssr103996	transcription start site region 103996	193 bp downstream
Tssr103997	transcription start site region 103997	23 bp downstream
Tssr103998	transcription start site region 103998	74 bp upstream
Tssr103999	transcription start site region 103999	1030 bp upstream
Tssr104000	transcription start site region 104000	1142 bp upstream
Tssr104001	transcription start site region 104001	1172 bp upstream
Tssr104002	transcription start site region 104002	1198 bp upstream
Tssr104003	transcription start site region 104003	1271 bp upstream
Tssr104004	transcription start site region 104004	1297 bp upstream
Tssr104005	transcription start site region 104005	1321 bp upstream
Tssr109976	transcription start site region 109976	135 bp downstream
Tssr109977	transcription start site region 109977	1059 bp downstream
Tssr109978	transcription start site region 109978	1087 bp downstream
Tssr109979	transcription start site region 109979	1139 bp downstream
Tssr109980	transcription start site region 109980	1327 bp downstream