rs28278221 SNP Detail

Summary

• ID
  rs28278221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87686912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTG CCTGCAGAGT ATGAAGATGG
  Y
  GTCTCCATGC CCTTTGGCTG GACGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37228057	NES08587638	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	C		T
ss132512891	ENSMUSSNP1975459	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss323773658	CHEV_11_87609588	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28278221					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228057	NES08587638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87686912 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	1539 bp downstream
Rr453904	regulatory region 453904	65 bp proximal
Rr453905	regulatory region 453905	119 bp proximal
Tssr3631	transcription start site region 3631	1318 bp downstream
Tssr3632	transcription start site region 3632	818 bp downstream
Tssr3633	transcription start site region 3633	227 bp upstream
Tssr103987	transcription start site region 103987	1874 bp downstream
Tssr103988	transcription start site region 103988	1550 bp downstream
Tssr103989	transcription start site region 103989	1271 bp downstream
Tssr103990	transcription start site region 103990	859 bp downstream
Tssr103991	transcription start site region 103991	786 bp downstream
Tssr103992	transcription start site region 103992	768 bp downstream
Tssr103993	transcription start site region 103993	294 bp downstream
Tssr103994	transcription start site region 103994	212 bp downstream
Tssr103995	transcription start site region 103995	43 bp downstream
Tssr103996	transcription start site region 103996	within coordinates
Tssr103997	transcription start site region 103997	167 bp upstream
Tssr103998	transcription start site region 103998	274 bp upstream
Tssr103999	transcription start site region 103999	1230 bp upstream
Tssr104000	transcription start site region 104000	1342 bp upstream
Tssr104001	transcription start site region 104001	1372 bp upstream
Tssr104002	transcription start site region 104002	1398 bp upstream
Tssr104003	transcription start site region 104003	1471 bp upstream
Tssr104004	transcription start site region 104004	1497 bp upstream
Tssr104005	transcription start site region 104005	1521 bp upstream
Tssr109976	transcription start site region 109976	335 bp downstream
Tssr109977	transcription start site region 109977	1259 bp downstream
Tssr109978	transcription start site region 109978	1287 bp downstream
Tssr109979	transcription start site region 109979	1339 bp downstream
Tssr109980	transcription start site region 109980	1527 bp downstream