rs28278224 SNP Detail

Summary

• ID
  rs28278224
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87686638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACTGGC TTAAGGGGTC
  TCTCAGCATT AGCAAACTTG AGAACCACTG GTCTAAGGAG TCTCGGGGCC TCTGAGCTGG
  CCCACCCCCC TCCTCACCCT CACTGGGCTA CTCAGCCCCA GGTTGCCTAG CATAGGAAAT
  GAGGTGGGGG AAGGCTCGGA TCTAAGATCA TGGCTCACTC TTGCAGATGT GTTGACACCT
  K
  CTCAGCTGAA TCTGTTGTCC GTGTCAAGTG GCTGTGCCTA TCAGGACGTG AGGGTGACAT
  GCCCACCGAA TGACAAGTAT CGCACCATCA CTGGACACTG CAACAACAGG TGTGGGCCCA
  GGGCAGTTCA GGGTTGTGTG GTGTAGGGGG TCTAGGTCTT GCCTGTGGCG ACCCATTGGG
  CCAGAGCTCT GTGCTTCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37228060	NES08587635	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28278224					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228060	NES08587635	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87686638 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	1265 bp downstream
Rr453904	regulatory region 453904	339 bp proximal
Rr453905	regulatory region 453905	393 bp proximal
Tssr3631	transcription start site region 3631	1044 bp downstream
Tssr3632	transcription start site region 3632	544 bp downstream
Tssr3633	transcription start site region 3633	501 bp upstream
Tssr103982	transcription start site region 103982	1984 bp downstream
Tssr103983	transcription start site region 103983	1965 bp downstream
Tssr103984	transcription start site region 103984	1780 bp downstream
Tssr103985	transcription start site region 103985	1755 bp downstream
Tssr103986	transcription start site region 103986	1741 bp downstream
Tssr103987	transcription start site region 103987	1600 bp downstream
Tssr103988	transcription start site region 103988	1276 bp downstream
Tssr103989	transcription start site region 103989	997 bp downstream
Tssr103990	transcription start site region 103990	585 bp downstream
Tssr103991	transcription start site region 103991	512 bp downstream
Tssr103992	transcription start site region 103992	494 bp downstream
Tssr103993	transcription start site region 103993	20 bp downstream
Tssr103994	transcription start site region 103994	43 bp upstream
Tssr103995	transcription start site region 103995	219 bp upstream
Tssr103996	transcription start site region 103996	271 bp upstream
Tssr103997	transcription start site region 103997	441 bp upstream
Tssr103998	transcription start site region 103998	548 bp upstream
Tssr103999	transcription start site region 103999	1504 bp upstream
Tssr104000	transcription start site region 104000	1616 bp upstream
Tssr104001	transcription start site region 104001	1646 bp upstream
Tssr104002	transcription start site region 104002	1672 bp upstream
Tssr104003	transcription start site region 104003	1745 bp upstream
Tssr104004	transcription start site region 104004	1771 bp upstream
Tssr104005	transcription start site region 104005	1795 bp upstream
Tssr109976	transcription start site region 109976	609 bp downstream
Tssr109977	transcription start site region 109977	1533 bp downstream
Tssr109978	transcription start site region 109978	1561 bp downstream
Tssr109979	transcription start site region 109979	1613 bp downstream
Tssr109980	transcription start site region 109980	1801 bp downstream