rs28278225 SNP Detail

Summary

• ID
  rs28278225
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87686109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCACTG CTCCTCCGTG
  GTTCTCTCCA GAGTTCTTTC TGCCTGCTCA CCGCAGGCTG GCCTTTGCTG AGTGTCTCTA
  TCCCCCTTCT CTGGCCCTCC CTTGTCTAAA CAGCATCAAG CGGAGCCTCC AAAGCGGCTC
  TGCCAGCCCC ACGGAGCTCC TGTTTTACTT CAAGCAGCCG GTGGCGGGCA CCAGAACAGC
  W
  GTGAGGGCCG CTGATTATCT ACATGTGGCC CTAGACCTGC TGAAGAGGAA GCTGCAGCCC
  CTGTGGCCAA GGCCTTTCAA TGTTACAGGT ACTCTAACTC CTTTTGTGCT ACCACCTCCA
  CCCCAAGCAA CTTCTGTCTC CAAGCCTCCA TTCAAGGCAG TGGTTCTTAA CCTGTGGGTC
  GCTACCCCTT CGGGTACGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37228061	NES08587650	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28278225					SNP	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228061	NES08587650	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87686109 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	281 bp downstream
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	736 bp downstream
Rr453904	regulatory region 453904	868 bp proximal
Rr453905	regulatory region 453905	922 bp proximal
Tssr3631	transcription start site region 3631	515 bp downstream
Tssr3632	transcription start site region 3632	15 bp downstream
Tssr3633	transcription start site region 3633	1030 bp upstream
Tssr103978	transcription start site region 103978	1868 bp downstream
Tssr103979	transcription start site region 103979	1838 bp downstream
Tssr103980	transcription start site region 103980	1800 bp downstream
Tssr103981	transcription start site region 103981	1478 bp downstream
Tssr103982	transcription start site region 103982	1455 bp downstream
Tssr103983	transcription start site region 103983	1436 bp downstream
Tssr103984	transcription start site region 103984	1251 bp downstream
Tssr103985	transcription start site region 103985	1226 bp downstream
Tssr103986	transcription start site region 103986	1212 bp downstream
Tssr103987	transcription start site region 103987	1071 bp downstream
Tssr103988	transcription start site region 103988	747 bp downstream
Tssr103989	transcription start site region 103989	468 bp downstream
Tssr103990	transcription start site region 103990	56 bp downstream
Tssr103991	transcription start site region 103991	3 bp upstream
Tssr103992	transcription start site region 103992	24 bp upstream
Tssr103993	transcription start site region 103993	500 bp upstream
Tssr103994	transcription start site region 103994	572 bp upstream
Tssr103995	transcription start site region 103995	748 bp upstream
Tssr103996	transcription start site region 103996	800 bp upstream
Tssr103997	transcription start site region 103997	970 bp upstream
Tssr103998	transcription start site region 103998	1077 bp upstream
Tssr109976	transcription start site region 109976	1138 bp downstream