rs28279671 SNP Detail

Summary

• ID
  rs28279671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164130039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGAGCTCC TAGATGGTGT TCTGTTGGAT GGCTCTGTGC
  CTGAATCTTT GTTCTTCCCA TGAACCGTTA CCTTGACCCC TTGCACACAG CATTCATTCT
  Y
  CCAGGTAACT TAACATTCAG ACATAGAATG ACTAACAATA CTTTTTCACC AGCCTTCACT
  TGCATCCCCT GCAGGGCTGG GCTGGGTGCA TGCAGAGATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37518004	NES08869444	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28279671					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518004	NES08869444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164130039 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	1149 bp upstream
Tssr740	transcription start site region 740	1469 bp upstream
Tssr741	transcription start site region 741	1634 bp upstream
Tssr21553	transcription start site region 21553	1078 bp upstream
Tssr21554	transcription start site region 21554	1097 bp upstream
Tssr21555	transcription start site region 21555	1142 bp upstream
Tssr21556	transcription start site region 21556	1490 bp upstream