rs28279673 SNP Detail

Summary

• ID
  rs28279673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164129996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG TGCCTGAATC TTTGTTCTTC
  Y
  CATGAACCGT TACCTTGACC CCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37518006	NES08869442	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	C	C		C		C
ss148221506	ENSMUSSNP6946385	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320605228	CHEV_2_164113812	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs28279673					SNP	C	C	T	C	T	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518006	NES08869442	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164129996 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	1192 bp upstream
Tssr740	transcription start site region 740	1512 bp upstream
Tssr741	transcription start site region 741	1677 bp upstream
Tssr21553	transcription start site region 21553	1121 bp upstream
Tssr21554	transcription start site region 21554	1140 bp upstream
Tssr21555	transcription start site region 21555	1185 bp upstream
Tssr21556	transcription start site region 21556	1533 bp upstream