rs28279675 SNP Detail

Summary

• ID
  rs28279675
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164129883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGCACA AGGGTTTAAA
  CTTGGACATT GGTTATTGAC CTGTTAAAAT GGCCTATGTT CTAAACTCAT GAGTAAATTC
  ACCATAGAAG AGTTCCTCCT GGAGAGTTCT CAAGGGTGGT ACATGGAGTA GTGGAGGAGT
  GAGCAAGAAA GGGAAGCAAT TGGAATTCTT GGTAATGTCA AATCTTGTGA CTGGCATCTC
  W
  ACTGAGGGAC AAGTTATCTT CAGTCGTGGG ACACAGAGAT AAGATTAGGA GGAGCTCAGA
  GCTCCTAGAT GGTGTTCTGT TGGATGGCTC TGTGCCTGAA TCTTTGTTCT TCCCATGAAC
  CGTTACCTTG ACCCCTTGCA CACAGCATTC ATTCTTCCAG GTAACTTAAC ATTCAGACAT
  AGAATGACTA ACAATACTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37518008	NES08869440	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs28279675					SNP	T	T	T	T	T	T	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518008	NES08869440	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164129883 () rs orientation: forward

Symbol	Name	Function Class
Svs3a	seminal vesicle secretory protein 3A	1305 bp upstream
Tssr740	transcription start site region 740	1625 bp upstream
Tssr741	transcription start site region 741	1790 bp upstream
Tssr21553	transcription start site region 21553	1234 bp upstream
Tssr21554	transcription start site region 21554	1253 bp upstream
Tssr21555	transcription start site region 21555	1298 bp upstream
Tssr21556	transcription start site region 21556	1646 bp upstream