rs28279703 SNP Detail

Summary

• ID
  rs28279703
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164119276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAGAGAT AATCTTACTT
  CTTCTTCTAC TACTACTACT ACTACTCATT TCCTCAGAAG CTTCGTCACC GATGGAGTCC
  TGTGGCCTAA CAAATACCTC TGGCTCAGAA CTTCTTGACA TATGGCCTCT GCTTCCCATC
  GAGAAGCTCT CTCTGACAGT TTCTTCCGAC TGCAAGAATT TTTCTGATGA GAGAAAAACA
  K
  GCTTTGCTCT CTACCTGTAT ATTTCCATAT AGTCTGGGAT TGTTATAAAC CAAGACAAGG
  CAAACAACCT TTGCTTTGAT TAGTAACCTA TCTTGTGATG CAATTTGCCA TTTTTGTTGT
  CTAGAAATTC CTTGATCTTT TGTCTAGTCA GAAATAGGCT TAATTGTGAG CGCCTGACTC
  ACCAGCAAAG CAGACACCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37518037	NES08869966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28279703					SNP	G	G	G	G	G	G	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518037	NES08869966	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164119276 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	130 bp distal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	1398 bp downstream
Tssr21550	transcription start site region 21550	1286 bp downstream
Tssr21551	transcription start site region 21551	221 bp downstream
Tssr21552	transcription start site region 21552	151 bp downstream
Tssr27409	transcription start site region 27409	1360 bp upstream
Tssr27410	transcription start site region 27410	1330 bp upstream
Tssr27411	transcription start site region 27411	1305 bp upstream
Tssr27412	transcription start site region 27412	1278 bp upstream
Tssr27413	transcription start site region 27413	1263 bp upstream
Tssr27414	transcription start site region 27414	1251 bp upstream
Tssr27415	transcription start site region 27415	1232 bp upstream
Tssr27416	transcription start site region 27416	274 bp upstream
Tssr27417	transcription start site region 27417	263 bp upstream
Tssr27418	transcription start site region 27418	192 bp upstream
Tssr27419	transcription start site region 27419	183 bp upstream
Tssr27420	transcription start site region 27420	162 bp upstream
Tssr27421	transcription start site region 27421	132 bp upstream
Tssr27422	transcription start site region 27422	93 bp upstream
Tssr27423	transcription start site region 27423	64 bp upstream
Tssr27424	transcription start site region 27424	51 bp upstream
Tssr27425	transcription start site region 27425	33 bp upstream
Tssr27426	transcription start site region 27426	220 bp downstream
Tssr27427	transcription start site region 27427	898 bp downstream
Tssr27428	transcription start site region 27428	944 bp downstream
Tssr27429	transcription start site region 27429	970 bp downstream
Tssr27430	transcription start site region 27430	1066 bp downstream