rs28279705 SNP Detail

Summary

• ID
  rs28279705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTC CACAACTCCC CTGGTATGGA
  Y
  GATGAGGCTC AATCCCATAA TGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37518039	NES08870018	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	C	C	C	T		T	C	T		T
ss148221325	ENSMUSSNP2482348	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320605189	CHEV_2_164102480	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28279705					SNP	T	C	T	C	C	C	C	C	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518039	NES08870018	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118664 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	368 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	786 bp downstream
Tssr21550	transcription start site region 21550	674 bp downstream
Tssr21551	transcription start site region 21551	358 bp upstream
Tssr21552	transcription start site region 21552	402 bp upstream
Tssr27409	transcription start site region 27409	748 bp upstream
Tssr27410	transcription start site region 27410	718 bp upstream
Tssr27411	transcription start site region 27411	693 bp upstream
Tssr27412	transcription start site region 27412	666 bp upstream
Tssr27413	transcription start site region 27413	651 bp upstream
Tssr27414	transcription start site region 27414	639 bp upstream
Tssr27415	transcription start site region 27415	620 bp upstream
Tssr27416	transcription start site region 27416	333 bp downstream
Tssr27417	transcription start site region 27417	342 bp downstream
Tssr27418	transcription start site region 27418	413 bp downstream
Tssr27419	transcription start site region 27419	423 bp downstream
Tssr27420	transcription start site region 27420	443 bp downstream
Tssr27421	transcription start site region 27421	467 bp downstream
Tssr27422	transcription start site region 27422	485 bp downstream
Tssr27423	transcription start site region 27423	523 bp downstream
Tssr27424	transcription start site region 27424	553 bp downstream
Tssr27425	transcription start site region 27425	574 bp downstream
Tssr27426	transcription start site region 27426	832 bp downstream
Tssr27427	transcription start site region 27427	1510 bp downstream
Tssr27428	transcription start site region 27428	1556 bp downstream
Tssr27429	transcription start site region 27429	1582 bp downstream
Tssr27430	transcription start site region 27430	1678 bp downstream