rs28279707 SNP Detail

Summary

• ID
  rs28279707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCCACG TGCCCTTAAA
  TCCTTAAATC CACGTGTCCT TAAATCTCTC TTGCTCCTCC TATTTCTCGA CTGCTCCTCC
  TCCTTCTCGC TTGTCCCTGC CACTTCTCTG ATTCAGGAAC AGGGACTTCT CTTTGTACTC
  ATGCCTTTCT TTTACGGAGA GGAGAGAGGA ATCTGTTTCC TGCATGTGTG AGGTCATTTA
  R
  AGAAGATCTT AACTATAAAA CTTCCACCAT GATTAGAAAT TAGCCTTTGA TAGCACTGGA
  AATGTAATTG AGGAAAATAT GTAATAAAAA ATATTAAAAA AAAAAGAAAT TAGCCTTTGA
  CAGATAAGTC TATAAGAATG AATAAGGTTA TAGGCTTATA ACTGTAGTGA GCATTCAAGC
  TTTTTTTTTC TTCACCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37518041	NES08870016	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28279707					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518041	NES08870016	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118317 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	715 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	439 bp downstream
Tssr21550	transcription start site region 21550	327 bp downstream
Tssr21551	transcription start site region 21551	705 bp upstream
Tssr21552	transcription start site region 21552	749 bp upstream
Tssr27409	transcription start site region 27409	401 bp upstream
Tssr27410	transcription start site region 27410	371 bp upstream
Tssr27411	transcription start site region 27411	346 bp upstream
Tssr27412	transcription start site region 27412	319 bp upstream
Tssr27413	transcription start site region 27413	304 bp upstream
Tssr27414	transcription start site region 27414	292 bp upstream
Tssr27415	transcription start site region 27415	273 bp upstream
Tssr27416	transcription start site region 27416	680 bp downstream
Tssr27417	transcription start site region 27417	689 bp downstream
Tssr27418	transcription start site region 27418	760 bp downstream
Tssr27419	transcription start site region 27419	770 bp downstream
Tssr27420	transcription start site region 27420	790 bp downstream
Tssr27421	transcription start site region 27421	814 bp downstream
Tssr27422	transcription start site region 27422	832 bp downstream
Tssr27423	transcription start site region 27423	870 bp downstream
Tssr27424	transcription start site region 27424	900 bp downstream
Tssr27425	transcription start site region 27425	921 bp downstream
Tssr27426	transcription start site region 27426	1179 bp downstream
Tssr27427	transcription start site region 27427	1857 bp downstream
Tssr27428	transcription start site region 27428	1903 bp downstream
Tssr27429	transcription start site region 27429	1929 bp downstream