rs28279708 SNP Detail

Summary

• ID
  rs28279708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGCGCC CGTGCGAGGA
  ACCCACGTGC CCTTAAATCC TTAAATCCAC GTGTCCTTAA ATCTCTCTTG CTCCTCCTAT
  TTCTCGACTG CTCCTCCTCC TTCTCGCTTG TCCCTGCCAC TTCTCTGATT CAGGAACAGG
  GACTTCTCTT TGTACTCATG CCTTTCTTTT ACGGAGAGGA GAGAGGAATC TGTTTCCTGC
  R
  TGTGTGAGGT CATTTAAAGA AGATCTTAAC TATAAAACTT CCACCATGAT TAGAAATTAG
  CCTTTGATAG CACTGGAAAT GTAATTGAGG AAAATATGTA ATAAAAAATA TTAAAAAAAA
  AAGAAATTAG CCTTTGACAG ATAAGTCTAT AAGAATGAAT AAGGTTATAG GCTTATAACT
  GTAGTGAGCA TTCAAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37518042	NES08870015	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28279708					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518042	NES08870015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118300 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	732 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	422 bp downstream
Tssr21550	transcription start site region 21550	310 bp downstream
Tssr21551	transcription start site region 21551	722 bp upstream
Tssr21552	transcription start site region 21552	766 bp upstream
Tssr27409	transcription start site region 27409	384 bp upstream
Tssr27410	transcription start site region 27410	354 bp upstream
Tssr27411	transcription start site region 27411	329 bp upstream
Tssr27412	transcription start site region 27412	302 bp upstream
Tssr27413	transcription start site region 27413	287 bp upstream
Tssr27414	transcription start site region 27414	275 bp upstream
Tssr27415	transcription start site region 27415	256 bp upstream
Tssr27416	transcription start site region 27416	697 bp downstream
Tssr27417	transcription start site region 27417	706 bp downstream
Tssr27418	transcription start site region 27418	777 bp downstream
Tssr27419	transcription start site region 27419	787 bp downstream
Tssr27420	transcription start site region 27420	807 bp downstream
Tssr27421	transcription start site region 27421	831 bp downstream
Tssr27422	transcription start site region 27422	849 bp downstream
Tssr27423	transcription start site region 27423	887 bp downstream
Tssr27424	transcription start site region 27424	917 bp downstream
Tssr27425	transcription start site region 27425	938 bp downstream
Tssr27426	transcription start site region 27426	1196 bp downstream
Tssr27427	transcription start site region 27427	1874 bp downstream
Tssr27428	transcription start site region 27428	1920 bp downstream
Tssr27429	transcription start site region 27429	1946 bp downstream